PERK

PERK (Protein Kinase R-like Endoplasmic Reticulum Kinase) signaling is a critical pathway within the unfolded protein response (UPR), which is a cellular stress response related to the endoplasmic reticulum (ER). The ER is an essential organelle in cells, responsible for folding, modifying, and transporting proteins. When the ER becomes stressed due to the accumulation of unfolded or misfolded proteins, it activates the UPR to restore normal function.

  • Components of PERK Signaling
    PERK (EIF2AK3): A transmembrane protein kinase located in the ER. Under normal conditions, PERK is inactive and bound to the ER chaperone BiP/GRP78. Upon ER stress, PERK is released from BiP/GRP78 and undergoes dimerization and autophosphorylation, becoming active.
    eIF2α (Eukaryotic Initiation Factor 2 Alpha): Once activated, PERK phosphorylates eIF2α. Phosphorylated eIF2α leads to a general reduction in protein synthesis, which helps alleviate the burden of unfolded proteins in the ER.
    ATF4 (Activating Transcription Factor 4): Although general protein synthesis is reduced, specific mRNAs, like ATF4, are preferentially translated. ATF4 is a transcription factor that induces the expression of genes involved in amino acid metabolism, redox reaction, and stress response.
    CHOP (C/EBP Homologous Protein): ATF4 can induce the expression of CHOP, a transcription factor that promotes apoptosis under conditions of prolonged ER stress.
  • Functions of PERK Signaling
    Restoration of ER Homeostasis: By reducing general protein synthesis and promoting the expression of genes that aid in protein folding and degradation, PERK signaling helps to restore ER homeostasis.
    Cell Survival and Apoptosis: Initially, PERK signaling aims to protect the cell by reducing the load of unfolded proteins. However, if ER stress persists, PERK signaling can lead to apoptosis, thus eliminating cells that are unable to restore ER function, which could otherwise lead to disease.
  • Role in Diseases
    Aberrations in PERK signaling have been implicated in various diseases, including neurodegenerative diseases (such as Alzheimer's and Parkinson's), diabetes (particularly in the context of pancreatic β-cell dysfunction), and cancer. In cancer, PERK signaling can have a dual role, contributing to both the survival of cancer cells under stress conditions and to cell death, making it a target of interest for therapeutic intervention.
  • Therapeutic Implications
    Due to its central role in managing ER stress, the PERK signaling pathway is a potential target for therapeutic intervention in diseases characterized by ER stress. Modulators of PERK signaling are being explored for their therapeutic potential in treating diseases such as neurodegeneration, diabetes, and cancer. However, the dual role of PERK in cell survival and death complicates its targeting, highlighting the need for nuanced therapeutic strategies that can modulate the pathway in disease-specific contexts.

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Citations
  1. eIF2α dephosphorylation inhibitor

    Salubrinal is a cell-permeable, selective inhibitor of cellular phosphatase complexes that dephosphorylate eukaryotic translation initiation factor 2 subunit α (eIF2α). Protects cells from endoplasmic reticulum stress-induced apoptosis (EC50 ~ 15 μM).
  2. PERK inhibitor

    GSK2606414 is an orally available, potent, and selective PERK inhibitor with IC50 of 0.4 nM.
  3. PERK Inhibitor

    GSK2656157 is an ATP-competitive inhibitor of PERK enzyme activity with an IC(50) of 0.9 nmol/L. It is highly selective for PERK with IC(50) values >100 nmol/L against a panel of 300 kinases.
  4. PERK inhibitor

    ISRIB (mix-isomer) is a potent and selective small molecule inhibitor of PERK signaling (IC50 ~5 nM) that can potently reverse the effects of eIF2α phosphorylation.

  5. PERK inhibitor

    ISRIB is a potent and selective PERK inhibitor with IC50 of 5 nM.
  6. UPR modulator

    Azoramide is a small-molecule modulator of the unfolded protein response with antidiabetic activity.
  7. ER stress inhibitor

    Tauroursodeoxycholate (TUDCA; UR 906; Taurolite) is an endoplasmic reticulum (ER) stress inhibitor.
  8. EIF2AK3/PERK activator

    CCT020312 is a selective EIF2AK3/PERK activator. CCT020312 elicits EIF2A phosphorylation in cells.
  9. SOS1 activator

    VUBI1 (SOS1 Activator 1) is a benzimidazole-derived small molecule that acts as a potent activator of the guanine nucleotide exchange factor SOS1, with a dissociation constant (Kᴅ) of 44 nM. It promotes RAS activation by enhancing RAS-GTP formation and modulates downstream ERK phosphorylation, thereby influencing RAS–MAPK signaling. In addition, VUBI1 serves as a functional ligand for the development of PROTAC-based degraders, such as PROTAC SOS1 Degrader-1, to induce targeted SOS1 degradation. VUBI1 is a valuable compound for studying RAS pathway regulation and its role in cancer biology.
  10. RAS(ON) Inhibitor

    Daraxonrasib (RMC-6236) is an orally active, non-covalent RAS(ON) inhibitor that disrupts the interaction between wild-type or mutant RAS proteins and the RAS-binding domain of BRAF. It exhibits EC₅₀ values ranging from 28 to 220 nM across wild-type KRAS, NRAS, HRAS, and multiple oncogenic RAS variants. RMC-6236 inhibits pERK signaling and demonstrates anti-tumor activity in KRAS-mutant tumor models.

  11. PERK Inhibitor

    AMG PERK 44 is a highly selective inhibitor of the protein kinase PERK, exhibiting an IC50 of 6 nM. It demonstrates significant selectivity, being 1000-fold more potent than GCN2 (IC50 = 7300 nM) and 160-fold more selective over B-Raf (IC50 > 1000 nM). This compound has been shown to induce autophagy, making it a valuable tool for research into cellular stress responses and related metabolic pathways.
  12. PERK Activator

    MK-28 is a potent and selective activator of the protein kinase PERK (PKR-like ER kinase). This compound demonstrates significant pharmacokinetic properties, with a notable ability to penetrate the blood-brain barrier in murine models. MK-28 is primarily used in research related to ER stress response and unfolded protein response pathways, providing valuable insights into cellular homeostasis and neurodegenerative diseases.
  13. PERK Inhibitor

    PERK-IN-2 is a highly potent inhibitor of the PERK (PKR-like ER kinase) pathway, exhibiting an IC50 of 0.2 nM. This compound effectively modulates unfolded protein response (UPR) signaling, making it valuable for studies investigating the roles of PERK in cellular stress responses and related diseases. Applications include research on cancer biology, neurodegeneration, and metabolic disorders.
  14. PERK Inhibitor

    PERK-IN-4 is a highly selective inhibitor of the protein kinase R (PKR)-like endoplasmic reticulum kinase (PERK), demonstrating an IC50 of 0.3 nM. This compound effectively modulates the PERK pathway, which is activated in response to various endoplasmic reticulum stresses associated with numerous disease states. PERK-IN-4 is valuable for research applications focused on cellular stress responses and potential therapeutic strategies in diseases linked to the unfolded protein response.
  15. PERK Inhibitor

    HC-5404-Fu is a potent and orally active inhibitor of the protein kinase PERK, exhibiting an IC50 of 0.001 μM against human PERK. By blocking PERK activation induced by VEGFR-TKIs, HC-5404-Fu disrupts the adaptive stress response that typically enhances tumor survival. This compound enhances anti-angiogenic effects by inhibiting the formation of both newly formed and mature tumor blood vessels, particularly in renal cell carcinoma models. HC-5404-Fu is suitable for research focused on tumor biology and angiogenesis in renal cell carcinoma.
  16. PERK Inhibitor

    PERK-IN-5 is a highly potent inhibitor of PERK (Protein kinase RNA-like endoplasmic reticulum kinase), demonstrating IC50 values of 2 nM and 9 nM for PERK and phosphorylated eIF2α, respectively. This compound is selectively and orally bioavailable, making it an advantageous tool for in vivo studies. PERK-IN-5 has been shown to significantly inhibit tumor growth in the 786-O renal cell carcinoma xenograft model, positioning it as a valuable reagent for cancer research focusing on the UPR (unfolded protein response) pathway.
  17. PERK Inhibitor

    (S)-PERK-IN-5 is a selective inhibitor of the protein kinase PERK (PKR-like endoplasmic reticulum kinase), exhibiting an IC50 range of 0.101-0.250 μM. This compound plays a critical role in studies focused on the unfolded protein response and endoplasmic reticulum stress pathways. Its application is pertinent in exploring therapeutic strategies for diseases associated with protein misfolding and metabolic dysregulation.
  18. PERK Inhibitor

    PERK-IN-3 is a highly selective inhibitor of the Protein Kinase R (PKR)-like ER kinase (PERK) with an IC50 value of 7.4 nM. This compound effectively modulates the unfolded protein response, promoting cell survival under ER stress. It is primarily utilized in research investigating the role of PERK in cellular stress pathways, cancer biology, and neurodegenerative diseases.
  19. PERK Inhibitor

    PERK-IN-6 is a selective inhibitor of the Protein Kinase RNA-like Endoplasmic Reticulum Kinase (PERK), exhibiting an IC50 value of 2.5 nM. This compound inhibits PERK-mediated signaling pathways, making it a valuable tool for investigating the role of ER stress and unfolded protein response in various cellular processes. PERK-IN-6 is suitable for research applications in studying diseases associated with dysregulated PERK activity, including neurodegeneration and cancer.

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