In stressed HEK293T reporter cells, synthesized trans-ISRIB inhibited ATF4-luciferase activity with a reported IC50 of 5 nM, compared with 600 nM for cis-ISRIB. These values describe the cellular reporter assay. [2]
ISRIB effects depend on cellular context. In HEK293T cells, 200 nM ISRIB combined with tunicamycin reduced subsequent colony formation more than tunicamycin alone; ISRIB alone did not reduce colony formation in that assay. [2]
In primary mouse alveolar organoid cultures, 1 µM ISRIB increased organoid diameter in pooled-sex analyses of control and Ndufs2-deficient AT2 cells. Colony-forming efficiency showed no significant overall difference. Diameter served as a proxy for differentiation. [3]
ISRIB accelerates eIF2B-dependent GDP release with a phosphorylation-dependent limit
Biochemical assay · Purified human eIF2 and partially purified rabbit-reticulocyte eIF2B; radiolabeled GDP-release assay [1]
At 100 nM, ISRIB accelerated eIF2B-dependent GDP release. It did not accelerate intrinsic release or make phosphorylated eIF2 a usable substrate; stimulation was weak at the 1:1 eIF2:eIF2-P ratio.
Literature-Reported Treatment Conditions
- Treatment concentration
- 100 nM ISRIB
- Exposure duration
- GDP release followed over 0–20 min
- Method
- Cell-free filter-binding assay with unlabeled GDP chase; first-order exponential-decay fitting
- Co-treatment
- eIF2B or buffer; unphosphorylated eIF2, eIF2-P, or mixtures at 3:1 and 1:1
- Reported limits
- ISRIB solvent is not specified in the GDP-dissociation subsection. Starting phosphorylation fraction of the purified eIF2 preparation was unknown to the authors.
Methods and source locations
Compound reported in the paper: ISRIB (trans-isomer); Compound label in the paper: ISRIB-A1, trans-1,4-cyclohexyl parent compound
Applies to the reported experimental material and model; does not establish present Adooq lot performance.
Figure 5A–D and Figure 5 supplement 1; Results: ISRIB enhances the GEF activity of eIF2B; Methods: GDP dissociation assay; Discussion
eIF2B-dependent GDP-release half-time: [3H]-GDP filter binding; Figure 5A N = 3, error bars ± SD — Figure 5A; associated Results
GDP-release response with phosphorylated eIF2: Mixture assay; Figure 5B–D N = 2, error bars ± SD — Figure 5B–D; associated Results
Stereoisomer comparison in an ATF4 translation reporter
Cell-based study · HEK293T cells expressing an ATF4 5′-UTR firefly-luciferase reporter [2]
Synthesized trans-ISRIB inhibited stress-induced reporter activity more potently than the cis-isomer. The reported IC50 is a cellular reporter endpoint.
Literature-Reported Treatment Conditions
- Treatment concentration
- ISRIB concentration-response series; individual doses are plotted rather than enumerated in the caption
- Exposure duration
- 7 h
- Method
- ATF4-luciferase reporter
- Co-treatment
- Tunicamycin 2 µg/mL to induce ER stress
- Reported limits
- Final vehicle concentration for Figure 2B is not specified in its caption; do not substitute conditions from the earlier library screen.
Methods and source locations
Compound reported in the paper: ISRIB (trans-isomer); Compound label in the paper: Synthesized trans-ISRIB; cis-ISRIB comparator
Applies to the reported experimental material and model; does not establish present Adooq lot performance.
Figure 2A–B; Results: A symmetric bisglycolamide, ISRIB, is a potent inhibitor of PERK signaling; Materials and methods: cell culture, reporter luminescence; Synthesis of ISRIB identity
Inhibition of stress-induced ATF4-luciferase reporter: N = 2; mean ± SD. Labels in Figure 2B and Results; values are not estimated from curves. — Figure 2B and adjacent Results
ISRIB reduces clonogenic survival after ER stress
Cell-based study · HEK293T cells, post-treatment clonal outgrowth visualized with crystal violet [2]
ISRIB alone did not reduce colony formation in this assay. Combined ISRIB and tunicamycin produced fewer and smaller colonies than tunicamycin alone.
Literature-Reported Treatment Conditions
- Treatment concentration
- 200 nM ISRIB
- Exposure duration
- 24 h exposure followed by reseeding for clonal outgrowth
- Method
- Crystal-violet colony visualization following a threefold cell-dilution series
- Co-treatment
- Tunicamycin 2 µg/mL; single-agent and untreated controls
- Reported limits
- Post-reseeding outgrowth duration, final vehicle concentration and replicate count are not specified in the Figure 5A caption or associated text reviewed.
Methods and source locations
Compound reported in the paper: ISRIB (trans-isomer); Compound label in the paper: Synthesized trans-ISRIB
Applies to the reported experimental material and model; does not establish present Adooq lot performance.
Figure 5A; Results: ISRIB impairs adaptation to ER-stress; cell-culture methods; trans-ISRIB identity declaration after Figure 2
Clonal colony number and size after treatment: Crystal-violet staining; no numerical colony count or calculated synergy score extracted. — Figure 5A image/caption and associated Results
ISRIB increases organoid diameter without a detected colony-efficiency difference
Cell-based study · AT2 cells from 6-day-old NDUFS2 control and lung-epithelial Ndufs2 conditional-knockout mice, co-cultured with wild-type lung fibroblasts in 3D [3]
ISRIB increased organoid diameter in the pooled-sex comparisons for both genotypes. Colony-forming efficiency showed no significant overall difference. Diameter is a proxy for differentiation in this assay.
Literature-Reported Treatment Conditions
- Treatment concentration
- 1 µM ISRIB
- Exposure duration
- Culture imaged after 10 days; ISRIB introduced the day after plating and refreshed every other day
- Method
- 3D alveolar organoid culture; brightfield and lineage-fluorescence imaging
- Vehicle
- DMSO comparator
- Co-treatment
- AT2/fibroblast co-culture in organoid growth medium containing aspartate and asparagine; no other experimental drug comparator in selected panels
- Reported limits
- Final DMSO percentage and total organoid-level technical-replicate count are not specified in the selected caption/methods.
Methods and source locations
Compound reported in the paper: ISRIB (trans-isomer); Compound label in the paper: ISRIB, AdooQ A14302
Applies to the reported experimental material and model; does not establish present Adooq lot performance.
Extended Data Figure 12a–f; Results paragraph beginning: To determine whether the impaired alveolar epithelial differentiation; Methods: Mice and three-dimensional alveolar organoid culture
Organoid diameter, used as a proxy for differentiation: Šídák multiple-comparison tests; lines denote median; n = 6 mice per genotype (three males and three females), with technical replicates; no diameters estimated from violins. — Extended Data Figure 12a–e and caption
Colony-forming efficiency, used as a proxy for proliferation: No significant overall difference among displayed genotype/treatment groups; this does not establish equivalence or directly measure cell-division rate. — Extended Data Figure 12f and caption