Fig. 1 · Structure

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Etoposide (VP-16)

Cat. No. A10373 CAS 33419-42-0

Topoisomerase II inhibitor

Etoposide forms a ternary complex with DNA and the topoisomerase II enzyme (which aids in DNA unwinding), prevents re-ligation of the DNA strands, and by doing so causes DNA strands to break. Therefore, this causes errors in DNA synthesis and promotes apoptosis of the cancer cell.

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Publications for Etoposide

10 publications citing this product

  1. Bageshri Naimish Nanavati, .et al. , Curr Biol, 2024, Sep 9;34(17):4081-4090 PMID: 39153481
  2. Wan J Gan, .et al. , Cytoskeleton (Hoboken), 2024, Jul 10 PMID: 38984538
  3. Wan J. Gan, .et al. , bioRxiv, 2024, March 10
  4. Zoya Mann, .et al. , Mol Biol Cell, 2024, Jan 1; 35(1) PMID: 37903230
  5. Bageshri Naimish Nanavati, .et al. , bioRxiv, 2023, Feb 23 PMID: 36865131
  6. Sibei Wang, .et al. , Molecules, 2023, Jan 19;28(3):1016 PMID: 36770683
  7. Reiko Watanabe, .et al. , J Med Chem, 2021, Mar 11;64(5):2725-2738 PMID: 33619967
  8. Chen JC, .et al. , Biomolecules, 2019, Sep 9;9(9) PMID: 31505885
  9. Takashi Azuma, .et al. , SEP PURIF TECHNOL, 2019, Apr; 212: 483-489
  10. Calhelha RC, .et al. , Analyst, 2017, Oct 23;142(21):4124-4141 PMID: 28991301

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Biological Activity

Bioactivity / Mechanism

Etoposide stabilizes persistent topoisomerase II–DNA cleavage complexes. In a purified human enzyme dilution assay, the reported half-lives of etoposide-induced DNA breaks were ∼30 min for topoisomerase IIα and ∼3 min for IIβ. These persistence measurements are distinct from an inhibitory IC50. [1]

Literature-reported observations and conditions; not Adooq-tested protocols or general treatment recommendations.

Target & Activity

Target Activity Value
Topo II (Cell-free assay)

Cellular Effect

Cell Line Activity Value Description Reference
1A9 ED50 0.15 μM Dose required to cause reduction in human ovarian 1A9 cancer cells after 3 days incubation [PMID: 15456257]
1A9/ptx-10 ED50 > 5 μM Dose required for reduction in paclitaxel resistant human ovarian 1A9-PTX10 cancer cells after 3 days incubation [PMID: 15456257]
3LL cell line IC50 4 μM Cytotoxicity against mouse 3LL CRL 1642 cells after 48 hrs by MTT assay [PMID: 18558490]
4T1 IC50 > 10 μM Growth inhibition of mouse 4T1 cells after 72 hrs by MTT assay [PMID: 30471828]
5637 IC50 0.54 μM Antiproliferative activity against human 5637 cells after 96 hrs by crystal violet assay [PMID: 18434163]
A2058 IC50 8.9 μM Cytotoxicity against human A2058 cells incubated for 24 hrs by AlamarBlue staining based analysis [PMID: 36857518]
A2780 IC50 0.07 μM Growth inhibition human A2780 cells after 72 hrs by MTS assay [PMID: 30633861]
A2780 GI50 1.3 μM Cytotoxicity against human A2780 cells after 48 hrs by sulforhodamine B assay [PMID: 21737288]
A2780 GI50 1.3 μM Growth inhibition of human A2780 cells after 48 hrs by sulforhodamine B assay [PMID: 21489802]
A2780 GI50 1.3 μM Cytotoxicity against human A2780 cells after 48 hrs by sulforhodamine B based ELISA [PMID: 21402478]
A2780 GI50 1.31 μM Growth inhibition of human A2780 cells after 48 hrs by sulforhodamine B assay [PMID: 23849207]
A2780 GI50 1.31 μM Growth inhibition of human A2780 cells after 48 hrs by sulforhodamine B assay [PMID: 22364746]
A-375 IC50 0.24 μM Antiproliferative activity against human A375 cells assessed as reduction in cell viability after 72 hrs by ATPlite assay [PMID: 27096049]
A-375 IC50 0.24 μM Cytotoxicity against human A375 cells assessed as growth inhibition after 72 hrs by ATPlite assay [PMID: 26793989]
A-375 IC50 0.28 μM Cytotoxicity against human A-375 cells expressing high level of topoisomerase I/II measured after 72 hrs by MTT assay [PMID: 35612499]
A-375 IC50 0.5 μM Antiproliferation activity against human A375 cells assessed as reduction in cell viability incubated for 72 hrs by MTT assay [PMID: 33079544]
A-375 IC50 1.39 μM Anticancer activity against human A375 cells after 48 hrs by MTT assay [PMID: 22136907]
A-375 IC50 12 μM Cytotoxicity activity against human A375 cells after 48 hrs by NRU assay [PMID: 20570625]
A-375 IC50 19 μM Cytotoxicity activity against human A375 cells after 24 hrs by NRU assay [PMID: 20570625]
A-375 IC50 2.31 μg/mL Antiproliferative activity against human A375 cells after 48 hrs by MTT assay [PMID: 19410455]

20 records · Scroll to view more

In Vitro Studies

In human CEM leukemia cells, etoposide reduced CCK-8 viability after 8 h, with a reported cellular IC50 of ∼10 μM. This value is specific to the cell model, assay and exposure period. [1]

Etoposide (500 μM, 8 h) was used to induce apoptosis in Caco-2 monolayers. Extrusion of cleaved-caspase-3-positive cells was less efficient in MRLC-DD-expressing monolayers than in controls. The authors explicitly report using Adooq A10373 for this application. [2]

Persistence of etoposide-stabilized human topoisomerase II cleavage complexes

Biochemical assay · Purified human topoisomerase IIα or IIβ with negatively supercoiled pBR322 DNA [1]

After equilibration with etoposide and tenfold dilution, enzyme-associated DNA breaks persisted longer than with genistein. The reported decay half-lives differed by isoform; these are cleavage-complex persistence endpoints, not IC50 values.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
Persistence of topoisomerase II-associated double-stranded DNA breaks after dilutionReported approximate half-life IIα: ∼30 min; IIβ: ∼3 min[1]

Literature-Reported Treatment Conditions

Treatment concentration
50 μM before tenfold dilution
Exposure duration
6 min to establish cleavage equilibrium; post-dilution time course up to 30 min
Method
Cell-free DNA cleavage/dilution assay
Vehicle
Stock in 100% DMSO (20 mM); final assay DMSO fraction not specified.
Co-treatment
None in adopted etoposide treatment; comparator groups are separate treatments.
Reported limits
Exact drug dissociation rates were not measured. Do not interpret decay half-lives as binding constants.
Methods and source locations

Compound reported in the paper: Etoposide (VP-16); Compound label in the paper: etoposide

Reported etoposide experiment only; no salt conversion or batch equivalence inferred.

Materials and Methods: Persistence of Topoisomerase II-DNA Cleavage Complexes in Vitro; Results and Figure 7

Persistence of topoisomerase II-associated double-stranded DNA breaks after dilution: Agarose-gel quantification of linear DNA after tenfold dilution; pre-dilution cleavage set to 100%; error bars SD, three independent experiments. — Results paragraph immediately before Figure 7; Figure 7 and caption

Etoposide reduces CEM cell viability after an 8-hour exposure

Cell-based study · Human CEM leukemia cells [1]

Etoposide reduced CCK-8 viability with a reported IC50 of ∼10 μM, compared with ∼180 μM for genistein in this assay. The number describes this cellular endpoint and exposure time, not biochemical enzyme potency.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
CCK-8 cell viability relative to no-drug controlCellular IC50 ∼10 μM[1]

Literature-Reported Treatment Conditions

Treatment concentration
0–200 μM
Exposure duration
8 h
Method
CCK-8 cell viability assay
Vehicle
20 mM DMSO stock; final vehicle fraction not specified.
Co-treatment
None in adopted etoposide treatment; comparator groups are separate treatments.
Reported limits
Viability assay is a metabolic readout, not a direct count of apoptotic cells. No exact IC50 confidence interval reported in the read Results.
Methods and source locations

Compound reported in the paper: Etoposide (VP-16); Compound label in the paper: etoposide

Reported etoposide experiment only; no salt conversion or batch equivalence inferred.

Cell Viability Assay; Results: Figure 2 left panel and associated IC50 paragraph

CCK-8 cell viability relative to no-drug control: CCK-8, 450 nm; no-drug cultures set to 100%; error bars SD for three independent experiments. Genistein comparator IC50 ∼180 μM reported in Results. — Results paragraph referring to Figure 2 left panel; Figure 2 caption

Etoposide-induced apoptotic extrusion in Caco-2 monolayers

Cell-based study · Control and phosphomimetic MRLC-DD-expressing Caco-2 epithelial monolayers [2]

Etoposide was used to induce sporadic apoptosis. Among cleaved-caspase-3-positive cells, extrusion efficiency was lower in MRLC-DD monolayers than in control monolayers under the same etoposide exposure. This is a comparison of extrusion among apoptotic cells, not a drug cytotoxicity IC50 or proof of unchanged apoptosis rates.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
Percentage of cleaved-caspase-3-positive cells successfully extruded above the apical monolayer planeExtrusion efficiency comparison Lower with MRLC-DD than control; *p < 0.05[2]

Literature-Reported Treatment Conditions

Treatment concentration
500 μM
Exposure duration
8 h
Method
Etoposide treatment at 37°C followed by fixation and immunostaining; compare etoposide-exposed control and MRLC-DD monolayers
Co-treatment
None in adopted etoposide treatment; comparator groups are separate treatments.
Reported limits
Vehicle not identified in selected methods. S2 apoptosis-rate control referenced in Results but supplement not retrieved; no claim of equivalent apoptosis rates adopted.
Methods and source locations

Compound reported in the paper: Etoposide (VP-16); Compound label in the paper: etoposide

Reported etoposide experiment only; no salt conversion or batch equivalence inferred.

Figure 2A–B and caption; Results: global increase in baseline junctional tension; Methods: Induction of apoptosis and Extrusion analysis

Percentage of cleaved-caspase-3-positive cells successfully extruded above the apical monolayer plane: ZO-1/cleaved-caspase-3/DAPI confocal scoring; Figure 2B mean ± SEM; n ≥ 3 independent experiments; unpaired Student’s t test. No exact bar percentages extracted. — Figure 2A–B and caption; Methods: Extrusion analysis

In Vivo Studies

In the second HCT116 xenograft experiment reported by Kang et al., etoposide monotherapy (20 mg/kg intraperitoneally, twice weekly) reduced tumor growth, tumor weight and BrdU labeling versus vehicle. Efficacy was accompanied by reduced white and red blood cell counts, hemoglobin and hematocrit. The course is described as 3 weeks with terminal collection on day 18; these results do not establish a toxicity-free regimen. [3]

Etoposide efficacy and hematological toxicity in HCT116 xenografts

Animal study · Five-week-old male athymic BALB/c Slc-nu mice bearing HCT116 subcutaneous xenografts; second independent animal experiment [3]

Etoposide monotherapy reduced tumor volume, tumor weight and tumor BrdU labeling relative to vehicle. Hematological toxicity accompanied efficacy: WBC, RBC, hemoglobin and hematocrit were lower than vehicle. Daurinol groups were separate comparators, not combination treatment.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
Tumor growth, terminal tumor weight and BrdU-positive tumor cellsQualitative direction with reported significance Reduced versus vehicle[3]
Peripheral blood hematological parametersReported direction and significance WBC, RBC, hemoglobin and hematocrit decreased; each P < .001 versus vehicle[3]

Conditions shared by the study groups

Route
Intraperitoneal
Frequency
Twice weekly
Treatment course
Described as 3 weeks; mice killed on day 18
Vehicle
4.2% DMSO, 10.4% Cremophor, 10.4% ethanol and 75% PBS
Study groups and reported outcomes
Group / doseComparatorObserved resultReference
Etoposide monotherapy
20 mg/kg
Solvent-treated xenograft-bearing mice; n = 10 animals per group in MethodsReduced tumor growth, tumor weight and BrdU-positive fraction; reduced WBC, RBC, hemoglobin and hematocrit versus vehicle. Platelets were slightly increased, not decreased.[3]
Etoposide monotherapy
Model: Five-week-old male athymic BALB/c Slc-nu mice bearing HCT116 subcutaneous xenografts; second independent animal experiment
Reported limits: Methods describes a 3-week course while also specifying sacrifice on day 18; both retained without inventing dose dates. Table 1 lacks explicit n/dispersion explanation in its caption/footnotes.
Methods and source locations

Compound reported in the paper: Etoposide (VP-16); Compound label in the paper: etoposide

Reported etoposide experiment only; no salt conversion or batch equivalence inferred.

Figure 7A–D and caption; Table 1 and footnotes; Methods: Mouse Tumor Xenografts and Treatments; Hematological Analysis; second in vivo Results

Tumor growth, terminal tumor weight and BrdU-positive tumor cells: Caliper tumor volume, tumor weighing and BrdU immunohistochemistry; Figure 7B–D mean ± SD, n = 10. No exact plotted values estimated. — Figure 7B–D and caption; Results second in vivo experiment

Peripheral blood hematological parameters: Blood collected from abdominal vein into EDTA-coated tubes and analyzed on Avida120. Table 1 statistical dispersion/sample-size semantics are not explicitly stated in its caption/footnotes; no numerical ± entries reproduced. — Table 1 WBC, RBC, hemoglobin and hematocrit rows and footnote; Hematological Analysis; Results hematological toxicity

Etoposide monotherapy · Figure 7A–D and caption; Table 1 and footnotes; Methods: Mouse Tumor Xenografts and Treatments; Hematological Analysis; second in vivo Results

Specifications

Manufacturer Adooq Bioscience
Actions Inhibitor
CAS Number 33419-42-0
Applications Topoisomerase II inhibitor
Formula C29H32O13
Molecular Weight 588.6
Synonyms Vepesid; VP-16
SMILES
C[C@@H]1OC[C@@H]2[C@@H](O1)[C@@H]([C@H]([C@@H](O2)O[C@H]3[C@H]4COC(=O)[C@@H]4[C@@H](C5=CC6=C(C=C35)OCO6)C7=CC(=C(C(=C7)OC)O)OC)O)O

Storage & Solubility

In Vitro Solubility

Reported Solubility

SolventReported Solubility
DMSO 99 mg/mL (168.2 mM)
Water Insoluble
Ethanol Insoluble

Preparing Stock Solutions

Stock preparation is unavailable for this product molecular weight.

Calculated stock concentrations do not establish solvent solubility. Refer to the reported solubility data for experimental guidance.

In Vivo Preparation

Concentration
14 mg/mL
Vehicle
5% DMSO+40% PEG 300+5% Tween 80+ddH2O

Storage

Store powder at -20°C, keep desiccated.
In powder form, the chemical is stable for 36 months.
In solution, store at -20°C and use within 1 month to prevent loss of potency. Aliquot to avoid multiple freeze/thaw cycles.

Research References

  1. [1] Bandele OJ, Osheroff N. The efficacy of topoisomerase II-targeted anticancer agents reflects the persistence of drug-induced cleavage complexes in cells. Biochemistry (2008). PMID: 18922022 DOI: 10.1021/bi800981j Source material
  2. [2] Mann Z, Lim F, Verma S, et al. Preexisting tissue mechanical hypertension at adherens junctions disrupts apoptotic extrusion in epithelia. Molecular biology of the cell (2024). PMID: 37903230 DOI: 10.1091/mbc.e23-08-0337 Source material
  3. [3] Kang K, Oh SH, Yun JH, et al. A novel topoisomerase inhibitor, daurinol, suppresses growth of HCT116 cells with low hematological toxicity compared to etoposide. Neoplasia (New York, N.Y.) (2011). PMID: 22131880 DOI: 10.1593/neo.11972 Source material

Publications

10 publications citing this product

  1. Bageshri Naimish Nanavati, .et al. , Curr Biol, 2024, Sep 9;34(17):4081-4090 PMID: 39153481
  2. Wan J Gan, .et al. , Cytoskeleton (Hoboken), 2024, Jul 10 PMID: 38984538
  3. Wan J. Gan, .et al. , bioRxiv, 2024, March 10
  4. Zoya Mann, .et al. , Mol Biol Cell, 2024, Jan 1; 35(1) PMID: 37903230
  5. Bageshri Naimish Nanavati, .et al. , bioRxiv, 2023, Feb 23 PMID: 36865131
  6. Sibei Wang, .et al. , Molecules, 2023, Jan 19;28(3):1016 PMID: 36770683
  7. Reiko Watanabe, .et al. , J Med Chem, 2021, Mar 11;64(5):2725-2738 PMID: 33619967
  8. Chen JC, .et al. , Biomolecules, 2019, Sep 9;9(9) PMID: 31505885
  9. Takashi Azuma, .et al. , SEP PURIF TECHNOL, 2019, Apr; 212: 483-489
  10. Calhelha RC, .et al. , Analyst, 2017, Oct 23;142(21):4124-4141 PMID: 28991301

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