Fig. 1 · Structure

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Sofosbuvir (PSI-7977)

Cat. No. A11529 CAS 1190307-88-0

HCV Nucleotide Inhibitor

PSI-7977 is a phosphoramidate prodrug of PSI-7851, a nucleoside analog that, when phosphorylated, inhibits the RNA-dependent RNA polymerase of hepatitis C virus (EC50 = 92 nM).

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Publications for Sofosbuvir

1 publication citing this product

  1. Miyayama Y, .et al. , Microbiol Immunol, 2019, Dec 19 PMID: 31854467

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Biological Activity

Bioactivity / Mechanism

Sofosbuvir (PSI-7977) is metabolically activated to PSI-7409. Separately tested PSI-7409 inhibited purified HCV NS5B polymerases from four genotypes, supporting a metabolite-mediated polymerase-inhibition mechanism. These biochemical IC50 values apply to the triphosphate, not intact sofosbuvir. [1,2]

The initial hydrolysis is stereoselective: CatA favored PSI-7977, whereas CES1 showed complex, plateauing product formation with PSI-7977. CES1 steady-state parameters could not be determined. [1]

Literature-reported observations and conditions; not Adooq-tested protocols or general treatment recommendations.

Target & Activity

Target Activity Value
NS5B polymerase

Cellular Effect

Cell Line Activity Value Description Reference
Cardiac muscle cell CC50 > 300 μM Cardiotoxicity against human embryonic stem cell-induced ventricular cardiomyocytes administered on day 7 and measured on day 10 after 30 mins incubation by CellTiter Glo assay [PMID: 30653317]
CCRF-CEM CC50 > 100 μM Cytotoxicity against human CCRF-CEM assessed reduction in cell viability after 4 days by MTT assay [PMID: 30653317]
CCRF-CEM CC50 > 100 μM Cytotoxicity against human CEM cells assessed as inhibition of cell proliferation after 4 days by MTT assay [PMID: 28595015]
CCRF-CEM CC50 > 100 μM Cytotoxicity against human CEM cells assessed as reduction in cell viability after 6 days by trypan blue exclusion assay [PMID: 29066308]
CCRF-CEM CC50 > 100 μM Cytotoxicity against human CEM cells after 6 days by trypan blue exclusion method [PMID: 30655167]
HepaRG CC50 44 μM Cytotoxicity in human HepaRG cells assessed as reduction in cell viability incubated for 14 days by CellTiter-Glo assay [PMID: 30653317]
Hepatocyte CC50 > 300 μM Cytotoxicity against human primary hepatocytes assessed as reduction in cell viability after 72 hrs by MTT assay [PMID: 30653317]
HepG2 CC50 > 50 μM Cytotoxicity against human HepG2 cells after 96 hrs by CCK-8 assay [PMID: 29801997]
HepG2 IC50 > 50 μM Mitochondrial toxicity in human HepG2 cells assessed as inhibition of cytochrome c oxidase subunit 2 DNA levels measured on day 14 by RT-PCR method [PMID: 28595015]
HepG2 IC50 > 50 μM Cytotoxicity against human HepG2 cells assessed as inhibition of nuclear DNA levels measured on day 14 by RT-PCR method [PMID: 28595015]
HepG2 IC50 > 50 μM Mitochondrial toxicity in human HepG2 cells assessed as inhibition of cytochrome c oxidase subunit 2 DNA level followed by medium plus drugs replenishment every 3 to 4 days for 14 days relative to control [PMID: 30653317]
HepG2 IC50 45 μM Mitochondrial toxicity in human HepG2 cells assessed as inhibition of nuclear ribosomal-DNA level followed by medium plus drugs replenishment every 3 to 4 days for 14 days relative to control [PMID: 30653317]
HK-2 CC50 > 300 μM Nephrotoxicity in human HK2 cells after 72 hrs by Hoechst 33342/HCS live/dead green dye-based assay [PMID: 30653317]
Huh-7 CC50 > 10 μM Cytotoxicity against human HuH7 cells assessed as inhibition of cell proliferation after 4 days by MTS assay [PMID: 28595015]
Huh-7 CC50 > 10 μM Cytotoxicity against human HuH7 cells assessed as reduction in cell viability by MTT assay [PMID: 29066308]
Huh-7 CC50 > 100 μM Cytotoxicity against human HuH7 cells assessed reduction in cell viability after 3 to 5 days by MTT assay [PMID: 30653317]
Huh-7 CC50 > 100 μM Cytotoxicity against human HuH7 cells assessed as reduction in rRNA levels after 5 days by RT-PCR analysis [PMID: 30655167]
Huh-7 CC50 > 100 μM Cytotoxicity against human Huh7.5.1 cells after 48 hrs by luciferase reporter gene assay [PMID: 27994763]
Huh-7 CC50 > 1000 μM Cytotoxicity against human HuH7 cells after 72 hrs by CellTiter 96 AQueous one solution cell proliferation assay [PMID: 29172078]

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In Vitro Studies

In primary human hepatocytes, separate 50 µM exposures to PSI-7977, PSI-7976 or their mixture PSI-7851 produced similar intracellular triphosphate levels over 24 h. This finding supports cellular activation while limiting generalization of stereoisomer differences across models. [1]

Stereoselective hydrolysis of PSI-7977

Biochemical assay · Recombinant human cathepsin A (CatA) and carboxylesterase 1 (CES1); PSI-7976 and PSI-7851 comparators. [1]

CatA favored PSI-7977. CES1 converted some PSI-7977 but product formation plateaued, preventing steady-state parameter determination.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
PSI-7977 hydrolysis by CatAKm 700 ± 90 µM[1]
PSI-7977 hydrolysis by CatAkcat 7.4 ± 0.4 s−1[1]
PSI-7977 hydrolysis by CatAkcat/Km 0.0106 s−1 µM−1[1]
PSI-7977 steady-state kinetics with CES1qualitative Not determined due to complex kinetics[1]

Literature-Reported Treatment Conditions

Treatment concentration
Varied substrate concentrations for steady-state kinetics; 100 µM in the reported CES1 product-time-course discussion.
Exposure duration
Time course shown to 150 min in Figure 4A,B.
Method
Recombinant enzyme assays at 37 °C; PSI-7976 and the PSI-7851 mixture provide stereochemical comparators.
Reported limits
Exact substrate concentration series, kinetic replicate count and definition of Table 5 ± are not specified in the selected methods/table.
Methods and source locations

Compound reported in the paper: PSI-7977; Compound label in the paper: PSI-7977

Activation enzyme measurements; not polymerase inhibition potency or lot-specific testing.

Materials; enzyme methods; Results Stereoselectivity of CatA and CES1; Figure 4A,B; Table 5

PSI-7977 hydrolysis by CatA: Radiolabeled substrate kinetic assay; meaning of ± and replicate count not specified in Table 5. — Table 5; Experimental Procedures, steady-state kinetics

PSI-7977 hydrolysis by CatA: Radiolabeled substrate kinetic assay; meaning of ± and replicate count not specified in Table 5. — Table 5

PSI-7977 hydrolysis by CatA: Reported table value, not recalculated. — Table 5

PSI-7977 steady-state kinetics with CES1: Product time course plateaued; do not interpret as absence of hydrolysis. — Figure 4B; Table 5 footnote a; Results, Stereoselectivity of CatA and CES1

Triphosphate formation in primary human hepatocytes

Cell-based study · Primary human hepatocytes (HHPC), with PSI-7976 and PSI-7851 comparators. [1]

At matched exposure, all three materials produced similar intracellular PSI-7409 concentrations. This metabolic endpoint does not establish equivalent clinical efficacy.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
Intracellular PSI-7409 formationqualitative Similar concentrations after treatment with PSI-7977, PSI-7976 or PSI-7851[1]

Literature-Reported Treatment Conditions

Treatment concentration
50 µM of each material, tested separately.
Exposure duration
Up to 24 h.
Method
Cellular metabolism followed by HPLC analysis of intracellular metabolites.
Reported limits
Vehicle, number of HHPC donors and replicate/error semantics for Figure 4D are not specified in this experiment. Three donors in Figure 3 must not be assigned to Figure 4.
Methods and source locations

Compound reported in the paper: PSI-7977; Compound label in the paper: PSI-7977

Intracellular activation in primary human hepatocytes only.

Materials; Cellular Metabolism Study; HPLC; Figure 4D; Results and Discussion

Intracellular PSI-7409 formation: Cellular metabolism assay and HPLC; no exact concentration inferred from curves. — Figure 4D and caption; Results, Stereoselectivity of CatA and CES1

HCV polymerase inhibition by the active triphosphate

Biochemical assay · Purified recombinant HCV NS5BΔ21 polymerases: genotype 1b Con1, 2a JFH-1, 3a and 4a. [2]

Separately synthesized PSI-7409 inhibited all four tested polymerases. These are metabolite IC50 values, not sofosbuvir treatment concentrations.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
RNA polymerase activity: GT 1b, 2a, 3a and 4a, respectivelyIC50 1.6 ± 0.2; 2.8 ± 0.5; 0.7 ± 0.3; 2.6 ± 1.2 µM[2]

Literature-Reported Treatment Conditions

Treatment concentration
Increasing concentrations of PSI-7409; assay contained 1 µM of each natural ribonucleotide.
Exposure duration
30 min for GT 1b and 2a; 3 h for GT 3a and 4a.
Method
Cell-free RNA synthesis at 27 °C with purified NS5BΔ21; activity dose-response referenced to uninhibited activity.
Reported limits
Vehicle not specified for this cell-free assay. Different reaction times limit direct cross-genotype ranking.
Methods and source locations

Compound reported in the paper: PSI-7409 (active triphosphate metabolite); Compound label in the paper: PSI-7409 (active triphosphate metabolite)

Supports the polymerase-inhibition mechanism of the activated compound; cannot assign these IC50 values to the catalog prodrug.

Chemicals; Figure 1; cell-free assay methods; Figure 2; related Results

RNA polymerase activity: GT 1b, 2a, 3a and 4a, respectively: Radiolabeled nucleotide incorporation; Figure 2 reports SD from at least two independent experiments performed in duplicate. — Figure 2 graph, embedded table and caption; Results, biochemical inhibition paragraph

Specifications

Manufacturer Adooq Bioscience
Actions Inhibitor
CAS Number 1190307-88-0
Applications HCV Nucleotide Inhibitor
Formula C22H29FN3O9P
Molecular Weight 529.45
Synonyms GI-7977; PSI-7977
SMILES
C[C@@H](C(=O)OC(C)C)N[P@](=O)(OC[C@@H]1[C@H]([C@@]([C@@H](O1)N2C=CC(=O)NC2=O)(C)F)O)OC3=CC=CC=C3

Storage & Solubility

In Vitro Solubility

Reported Solubility

SolventReported Solubility
DMSO Warmed: 86 mg/mL (162.43 mM)
Water Warmed: 9 mg/mL (16.99 mM)
Ethanol 86 mg/mL (162.43 mM)

Preparing Stock Solutions

Stock preparation is unavailable for this product molecular weight.

Calculated stock concentrations do not establish solvent solubility. Refer to the reported solubility data for experimental guidance.

Storage

Store powder at -20°C, keep desiccated.
In powder form, the chemical is stable for 36 months.
In solution, store at -20°C and use within 1 month to prevent loss of potency. Aliquot to avoid multiple freeze/thaw cycles.

Research References

  1. [1] Murakami E, Tolstykh T, Bao H, et al. Mechanism of activation of PSI-7851 and its diastereoisomer PSI-7977 The Journal of biological chemistry (2010). PMID: 20801890 DOI: 10.1074/jbc.m110.161802 Source material
  2. [2] Lam AM, Murakami E, Espiritu C, et al. PSI-7851, a pronucleotide of beta-D-2'-deoxy-2'-fluoro-2'-C-methyluridine monophosphate, is a potent and pan-genotype inhibitor of hepatitis C virus replication Antimicrobial agents and chemotherapy (2010). PMID: 20516278 DOI: 10.1128/aac.00399-10 Source material

Publications

1 publication citing this product

  1. Miyayama Y, .et al. , Microbiol Immunol, 2019, Dec 19 PMID: 31854467

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