In MDA-MB-231 cells treated with TAK-901, RNA-seq analysis showed similar trends to those observed with ENMD-2076. TAK-901-treated TNBC1 organoids had a lower viable cell percentage than the DMSO control. In U87MG cells treated with TAK-901 or vehicle, RT-qPCR validated inhibition of identified lipid metabolism genes. [1,2,3]
Literature-reported observations and conditions; not Adooq-tested protocols or general treatment recommendations.
RNA sequencing trends in MDA-MB-231 cells
Cell-based study · MDA-MB-231 cells [1]
MDA-MB-231 cells were treated with TAK-901 at 1 or 2 μM for 24 hours, with DMSO as the control. RNA-seq analysis showed similar trends to those observed with ENMD-2076.
Literature-Reported Treatment Conditions
- Treatment concentration
- 1 or 2 μM
- Exposure duration
- for 24 hours
- Vehicle
- DMSO
- Reported limits
- Not stated in the sentences used: route.
Methods and source locations
Compound reported in the paper: TAK-901
Literature evidence for the named compound in the stated model; no Adooq product-use or lot-performance claim.
RESULTS > HTS2 screening identified aurora kinase inhibitors that reprogram the expression of TIP signature genes in TNBC cells (S42); MATERIALS AND METHODS > RNA sequencing (S145); MATERIALS AND METHODS > Gene Ontology and GSEA (S153); MATERIALS AND METHODS > Chemicals (S167); Fig. 4 legend (S221)
GSEA of RNA-seq results: GSEA of RNA-seq results; comparator: dimethyl sulfoxide (DMSO) — RESULTS > HTS2 screening identified aurora kinase inhibitors that reprogram the expression of TIP signature genes in TNBC cells (S42); MATERIALS AND METHODS > RNA sequencing (S145); Fig. 4 legend (S221)
Organoid viability following compound treatment
Cell-based study · TNBC1 organoids [2]
In TNBC1 organoids, the tested compound at 10 µM yielded a viable cell percentage of 23.22 ± 9.64%, compared with 97.38 ± 5.86% for DMSO (p < 0.001).
Literature-Reported Treatment Conditions
- Treatment concentration
- 10 µM
- Exposure duration
- administered two days post-passage of the organoids, and their effects were evaluated after five days
- Co-treatment
- Other interventions in this design: P/S 1×; HEPES 1×; B27 1×; Promicin 1×; N-acetylcysteine 1.25 μM; Rspo1 250 ng/mL; Noggin 100 ng/mL; EGF 5 ng/mL; A83-01 0.5 μM; SB202190 500 nM; Neuregulin 1 5 nM; FGF7 5 ng/mL; FGF10 20 ng/mL; Y27632 5 μM. Compound effect isolated by the comparison: vs. control.
- Reported limits
- Not stated in the sentences used: route, vehicle.
Methods and source locations
Compound reported in the paper: TAK-901
Literature evidence for the named compound in the stated model; no Adooq product-use or lot-performance claim.
2. Results > 2.2. Growth Inhibition Profiling of Epigenetic Drugs on TNBC Organoids and Cell Lines (S21); 2. Results > 2.4. Superior Cytotoxicity of Novel Agents Panobinostat, Pacritinib, TAK-901, and JIB-04 over Paclitaxel in TNBC Organoid Models (S43, S44, S48, S49); 4. Materials and Methods > 4.2. Tissue Processing and Organoid Culture (S69); Figure 4 legend (S135, S137)
viable cell percentage: viable cell percentage; comparator: DMSO — 2. Results > 2.4. Superior Cytotoxicity of Novel Agents Panobinostat, Pacritinib, TAK-901, and JIB-04 over Paclitaxel in TNBC Organoid Models (S49); Figure 4 legend (S137)
Lipid metabolism gene expression in U87MG cells
Cell-based study · U87MG cells [3]
U87MG cells were treated with TAK-901 at 10 μM or vehicle for 72 h. RT-qPCR validated inhibition of identified lipid metabolism genes, including SREBF1, ACLY, ASCC2, FASN, SCD, and FADS1.
Literature-Reported Treatment Conditions
- Treatment concentration
- 10 μM
- Exposure duration
- 72 h
- Reported limits
- Not stated in the sentences used: route, vehicle.
Methods and source locations
Compound reported in the paper: TAK-901
Literature evidence for the named compound in the stated model; no Adooq product-use or lot-performance claim.
3. Results > 3.4. TAK901 Reduces the Expression of Genes Involved in Lipid Metabolism (S129); Figure 4 legend (S218, S220)
Expression of genes related to fatty acid metabolism: Expression of genes related to fatty acid metabolism; comparator: vehicle — 3. Results > 3.4. TAK901 Reduces the Expression of Genes Involved in Lipid Metabolism (S129); Figure 4 legend (S218, S220)