In TNFα/cycloheximide-stimulated mouse embryonic fibroblasts, BAI1 reduced caspase-3/7 activation after 8 h (reported IC50 1.8 μM in wild-type cells). At 2 μM it suppressed the response in wild-type and Bak-deficient cells, with no significant suppression in Bax-deficient cells. The endpoint supports BAX dependence under these conditions. [1]
Victorelli et al. explicitly used Adooq A15335 BAI1 in irradiated MRC5 human fibroblasts. Treatment with 0.1–2.5 μM BAI1 over 10 days reduced secretion of the SASP factors IL-6, IL-8 and IP-10, with effects varying by concentration and cytokine; the 0.1 μM IL-8 comparison was not significant (P=0.06). These secretion endpoints do not demonstrate removal of senescent cells. [2]
Direct BAX binding and inhibition of liposomal permeabilization
Biochemical assay · Purified inactive human BAX; tBID-activated BAX in ANTS/DPX-loaded liposomes. [1]
BAI1 bound soluble BAX in ligand-observed NMR and MST assays. NMR perturbations localized an inhibitory pocket involving helices α3–α5; docking provided a proposed pose. BAI1 also inhibited tBID-induced BAX membrane permeabilization, supporting the authors’ allosteric-inhibition interpretation.
Literature-Reported Treatment Conditions
- Treatment concentration
- Liposome assay: BAI1 1.5–6 μM; BAX 400 nM; tBID 30 nM. Ligand-observed NMR: BAI1 150 μM and BAX 15 μM in Figure 1f. MST: BAI1 0.5–150 μM with labeled BAX 100 nM.
- Exposure duration
- Liposomes: 30 min BAX–BAI1 preincubation, followed by 30 min activation endpoint. MST: 10 min incubation.
- Method
- Cell-free NMR, MST and dye-release assays.
- Vehicle
- DMSO stocks diluted into assay buffer; NMR samples were DMSO matched.
- Co-treatment
- tBID activates BAX in the liposome assay.
- Reported limits
- Final DMSO percentage and experimental counterion are not specified in the reviewed main methods.
Methods and source locations
Compound reported in the paper: BAI1 (Bax channel blocker); Compound label in the paper: BAI1
Evidence concerns the paper’s BAI1 material. Salt-specific potency equivalence and performance of an Adooq lot were not tested.
Figure 1d–g; Figure 2; corresponding Results and Online Methods
BAI1 binding to inactive BAX: Microscale thermophoresis with 100 nM labeled BAX and increasing BAI1; 1:1 binding model. Figure 1g describes single points per titration, representative of 2 technical replicates and 3 independent experiments. The main text/caption does not define the ± term. — Results: Discovery of direct BAX activation inhibitors; Figure 1g; Online Methods: Microscale Thermophoresis
tBID-induced BAX-mediated ANTS release: 400 nM BAX, 30 nM tBID, read at 30 min; mean ± SD, n=3 replicates, representative of five independent experiments. Controls include BAX alone, compound without tBID, and BAX+tBID; Triton defines maximal release. No exact release percentages inferred from bars. — Figure 1d,e and caption; Online Methods: Liposomal permeabilization assay.
Localization of BAI1 interaction with BAX: 15N-BAX HSQC titration to BAX:BAI1 1:2, representative of three independent experiments; NMR-guided docking depicts a proposed binding pose, not a crystal structure. — Results: BAIs bind to inactive BAX at a novel allosteric site; Figure 2a–e and caption
BAX-dependent suppression of caspase-3/7 activation in MEFs
Cell-based study · Wild-type, Bax−/− and Bak−/− mouse embryonic fibroblasts stimulated with TNFα plus cycloheximide. [1]
BAI1 suppressed stimulus-induced caspase-3/7 activation in wild-type and Bak-deficient MEFs. It had no significant effect in Bax-deficient MEFs under the tested conditions. This supports BAX dependence in these models without establishing universal absence of BAK-related activity.
Literature-Reported Treatment Conditions
- Treatment concentration
- BAI1 dose series 0.312–10 μM in Figure 5a; 2 μM for genotype comparisons in Figure 5b–d.
- Exposure duration
- 8 h co-treatment.
- Method
- Caspase-Glo 3/7 luminescence assay.
- Vehicle
- Compounds prepared in DMSO; final percentage not given in reviewed methods.
- Co-treatment
- TNFα 50 ng/mL plus cycloheximide (10 μg/mL in Figure 5a; a graded cycloheximide series in Figure 5b–d).
- Reported limits
- Final DMSO fraction not identified in reviewed main methods.
Methods and source locations
Compound reported in the paper: BAI1 (Bax channel blocker); Compound label in the paper: BAI1
Evidence concerns the paper’s BAI1 material. Salt-specific potency equivalence and performance of an Adooq lot were not tested.
Figure 5a–d; Results: BAI1 selectively inhibits BAX-dependent cell death; Online Methods: Caspase-3/7 activation and cell viability assays
Inhibition of TNFα/cycloheximide-induced caspase-3/7 activation in wild-type MEFs: Reported in Results; Caspase-Glo 3/7 endpoint at 8 h. Figure 5a uses TNFα 50 ng/mL and cycloheximide 10 μg/mL, with BAI1 titration. Mean ± SD; n=3 replicates, representative of three independent experiments. — Results: BAI1 selectively inhibits BAX-dependent cell death; Figure 5a and caption; Online Methods: Caspase-3/7 activation and cell viability assays
Genotype dependence of BAI1 effect on stimulus-induced caspase-3/7 activation: 2 μM BAI1 for 8 h with TNFα 50 ng/mL and graded cycloheximide. Untreated, BAI1-alone, and stimulus-alone controls shown. Figure 5a also includes single stimulus components and Z-VAD-FMK control. Mean ± SD; n=3 replicates, representative of three independent experiments. — Figure 5a–d and caption; corresponding Results and Online Methods
BAI1 reduces SASP-factor secretion in irradiated human fibroblasts
Cell-based study · MRC5 human fibroblasts after 20 Gy X-ray-induced senescence; proliferating and senescent vehicle controls. [2]
BAI1 treatment reduced secreted IL-6, IL-8 and IP-10 in a concentration-dependent series in senescent MRC5 fibroblasts. Responses differed by cytokine and concentration; the low-dose IL-8 comparison was not significant. These endpoints characterize the secretory phenotype, not elimination of senescent cells.
Literature-Reported Treatment Conditions
- Treatment concentration
- BAI1 0.1, 1 and 2.5 μM, as labeled in Extended Data Figure 9f.
- Exposure duration
- Added immediately after irradiation and maintained for 10 days; refreshed every 48–72 h.
- Method
- Cell-culture treatment following 20 Gy X-ray irradiation.
- Vehicle
- DMSO vehicle control.
- Co-treatment
- No other pharmacological treatment in the adopted secretion experiment.
- Reported limits
- The reviewed methods list multiplex and confirmatory ELISA measurements without assigning each plotted cytokine value to one platform; final DMSO percentage is not identified.
Methods and source locations
Compound reported in the paper: BAI1 (Bax channel blocker); Compound label in the paper: BAI1
These fibroblast results are directly linked to catalog A15335 in the paper; they are not analytical validation of a current lot.
Extended Data Figure 9f and caption; Methods: Cell culture and treatments; Cytokine array
Secreted IL-6, IL-8 and IP-10 from MRC5 fibroblasts: Extended Data Figure 9f heatmap; n=4 independent experiments, mean fold change. Methods lists supernatant cytokine multiplex assays and confirmatory cytokine-specific ELISAs. No exact fold changes estimated from the heatmap. — Extended Data Figure 9f and caption; Methods: Cell culture and treatments; Cytokine array