Fig. 1 · Structure

Documents & Downloads

Idarubicin HCl

Cat. No. A10465 CAS 57852-57-0

Topoisomerase inhibitor

Idarubicin is an anthracycline antibiotic that is an anti-leukemia agent with higher DNA binding capacity and greater cytotoxicity than daunorubicin.

In Stock

Publications for Idarubicin HCl

1 publication citing this product

  1. Wei Y, .et al. , Mol Cell, 2017, Jun 1;66(5):581-596.e6 PMID: 28552615

Free Aliquoting for Your Order

Tell us your preferred amount per vial. We’ll confirm the options.

Biological Activity

Bioactivity / Mechanism

In a purified mammalian Top2 assay, idarubicin altered DNA cleavage in a site-dependent manner: cleavage increased at several sites but decreased at others relative to enzyme alone. This supports a Top2-linked DNA-cleavage mechanism under the tested conditions. The paper names idarubicin without specifying its salt form. [1]

Literature-reported observations and conditions; not Adooq-tested protocols or general treatment recommendations.

Target & Activity

Target Activity Value
Topo II (MCF-7 cells) (Cell-free assay) 3.3 ng/mL
Multicellular spheroids (Cell-free assay) 7.9 ng/mL

In Vitro Studies

Idarubicin hydrochloride reduced U937 metabolic activity, with a reported 36-h MTT IC50 of 0.2 µM. Relapsed-AML extracellular vesicle co-exposure shifted the reported IC50 to 0.35 µM; annexin V/PI measurements also showed attenuation of apoptosis with AML-derived vesicles. These results are specific to this cellular co-exposure model. [2]

Idarubicin also inhibited growth of nonmalignant human fibroblasts. After 2 h of exposure and 72 h in drug-free medium, MTT IC50 values were 2.69 ± 0.19 µM in WA-1, 5.26 ± 0.08 µM in T-158 and 7.69 ± 0.14 µM in C-5 cells (mean ± SD; five independent experiments). The salt form was unspecified, and these cell-line differences do not establish tumor selectivity or patient sensitivity. [3]

Sequence-dependent DNA cleavage by purified mammalian Top2

Biochemical assay · Purified DNA topoisomerase II from murine P388 nuclei; synthetic 36-bp DNA oligomer [1]

Relative to enzyme alone, idarubicin increased cleavage at several sites and reduced cleavage at others. Control lanes included DNA without enzyme and enzyme without drug; buffer conditions influenced basal cleavage.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
Top2-mediated strand cleavage at defined sitesQualitative cleavage pattern Site-dependent stimulation and suppression relative to drug-free enzyme control[1]

Literature-Reported Treatment Conditions

Treatment concentration
0.1 and 1 µM (Figure 1)
Exposure duration
20 min at 37 °C
Method
Cell-free DNA cleavage assay; denaturing gel analysis of labeled DNA strands.
Vehicle
Freshly prepared in deionized water.
Co-treatment
No co-drug.
Reported limits
Salt form not specified; no lot-specific identity or purity analysis reported in the read materials section.
Methods and source locations

Compound reported in the paper: Idarubicin; Compound label in the paper: idarubicin

Idarubicin evidence; hydrochloride form was not established in this experiment.

pp. 2275–2276, Materials and Methods; Figure 1; Table I; Results: Sequence specific DNA cleavage

Top2-mediated strand cleavage at defined sites: Figure 1 gel compared with Results; Table I contextualizes buffer-dependent basal cleavage. — p. 2275 Figure 1 and p. 2276 first Results paragraph and Table I

U937 response to idarubicin hydrochloride and attenuation by AML-derived EVs

Cell-based study · Human U937 leukemia cells; comparison with untreated cells and with healthy-donor or AML-derived EV co-exposure [2]

The authors reported a 36-h MTT IC50 of 0.2 µM for IDA alone and 0.35 µM with relapsed-AML EVs. Annexin V/PI readouts supported reduced apoptosis under AML-EV co-exposure. These findings describe a context-dependent cellular response, not a clinical resistance rate.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
Metabolic activity relative to untreated control after 36 hMTT IC50 0.2 µM[2]
Metabolic activity under relapsed-AML EV co-exposure after 36 hMTT IC50 0.35 µM[2]
Annexin V/PI apoptotic fraction with AML EV co-exposure relative to IDA aloneQualitative direction Reduced IDA-associated apoptosis with AML-derived EVs[2]

Literature-Reported Treatment Conditions

Treatment concentration
0.05, 0.1, 0.2, 0.3, 0.4 and 0.5 µM for single-agent MTT assay; Figures 4–5 include 0.2 µM IDA and a separate dose series.
Exposure duration
36 h
Method
MTT metabolic-activity assay relative to control; annexin V/PI flow cytometry for apoptosis.
Vehicle
PBS is reported for drug stock; a separate passage describes a 0.5 mM stock in RPMI. No separately defined final vehicle-control condition identified.
Co-treatment
Healthy-donor, newly diagnosed AML or relapsed-AML EV co-exposure compared with IDA alone; no cytarabine in the adopted experiment.
Reported limits
EV amounts alternate between µg and µg/mL in the paper; no normalized EV dose adopted. Stock descriptions are not reconciled. Figure captions use mean ± SE whereas general statistical methods say mean ± SD; no error magnitudes adopted.
Methods and source locations

Compound reported in the paper: Idarubicin hydrochloride; Compound label in the paper: IDA

Nominal concentrations and observed cellular endpoints for the reported hydrochloride material.

Experimental: Drug, Cell culture, MTT assay, Annexin V/PI, Bradford assay; Results: AML-EVS protected U937 cells and Induction of apoptosis; Figures 3–5

Metabolic activity relative to untreated control after 36 h: MTT; reported point value, not an enzyme potency or prescribed treatment dose. — Results: AML-EVS protected U937 cells; Figure 3A and caption

Metabolic activity under relapsed-AML EV co-exposure after 36 h: MTT; restricted to relapsed-EV condition directly depicted, although prose also refers to newly diagnosed AML EVs. — Results: AML-EVS protected U937 cells; Figure 3C

Annexin V/PI apoptotic fraction with AML EV co-exposure relative to IDA alone: Flow cytometry; exact percentages and normalized EV dose not adopted. — Results: Induction of apoptosis in U937 cells; Figures 4–5 with captions

Comparative cytotoxicity in nonmalignant human fibroblast lines

Cell-based study · Human skin fibroblasts: healthy-donor WA-1, trisomy-21 T-158 and type-II-diabetic C-5 lines [3]

After a 2-h drug exposure followed by 72 h in drug-free medium, idarubicin inhibited MTT-based growth in all three lines. The healthy-donor line had the lowest IC50; idarubicin IC50 values were lower than daunorubicin values in each line. These donor-derived cell lines do not establish patient-level sensitivity or tumor selectivity.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
50% growth inhibition relative to control in WA-1 healthy-donor fibroblastsMTT IC50 (mean ± SD; five independent experiments) 2.69 ± 0.19 µM[3]
50% growth inhibition relative to control in T-158 trisomy-21 fibroblastsMTT IC50 (mean ± SD; five independent experiments) 5.26 ± 0.08 µM[3]
50% growth inhibition relative to control in C-5 type-II-diabetic fibroblastsMTT IC50 (mean ± SD; five independent experiments) 7.69 ± 0.14 µM[3]
Comparator growth-inhibition IC50 values in WA-1, T-158 and C-5, respectivelyDaunorubicin MTT IC50 (mean ± SD; five independent experiments) 3.60 ± 0.17; 6.27 ± 0.16; 9.11 ± 0.12 µM[3]

Literature-Reported Treatment Conditions

Treatment concentration
0.5–10 µM
Exposure duration
2 h exposure, followed by 72 h drug-free culture; MTT incubation for 4 h.
Method
MTT assay; IC50 calculated from linear transformation of dose-response curves.
Vehicle
Drug vehicle not specified in the read methods. DMSO was used to solubilize MTT formazan, not identified as drug vehicle.
Co-treatment
None; daunorubicin was a separate comparator, not a co-treatment.
Reported limits
Salt form and supplier not specified in the read methods; one line represents each donor category.
Methods and source locations

Compound reported in the paper: Idarubicin; Compound label in the paper: IDA

Idarubicin evidence in nonmalignant cell lines; HCl form not established.

p. 184 Methods: Cell lines and Cytotoxicity studies; pp. 185–186 Results: Cytotoxicity assay and Table 1

50% growth inhibition relative to control in WA-1 healthy-donor fibroblasts: 2-h exposure followed by 72-h drug-free culture; MTT. — p. 186 Table 1; p. 184 Cytotoxicity studies

50% growth inhibition relative to control in T-158 trisomy-21 fibroblasts: 2-h exposure followed by 72-h drug-free culture; MTT. — p. 186 Table 1; p. 184 Cytotoxicity studies

50% growth inhibition relative to control in C-5 type-II-diabetic fibroblasts: 2-h exposure followed by 72-h drug-free culture; MTT. — p. 186 Table 1; p. 184 Cytotoxicity studies

Comparator growth-inhibition IC50 values in WA-1, T-158 and C-5, respectively: Separate daunorubicin exposure under the same cytotoxicity design. Table footnote: IDA vs DNR p < 0.05 in each line; T-158/C-5 vs normal p < 0.001. — p. 186 Table 1 and footnotes

Specifications

Manufacturer Adooq Bioscience
Actions Inhibitor
CAS Number 57852-57-0
Applications Topoisomerase inhibitor
Formula C26H28ClNO9
Molecular Weight 534
Synonyms Idamycin; Zavedos; 4-demethoxydaunorubicin; DMDR; IMI-30
SMILES
C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](CC3=C(C4=C(C(=C23)O)C(=O)C5=CC=CC=C5C4=O)O)(C(=O)C)O)N)O.Cl

Storage & Solubility

In Vitro Solubility

Reported Solubility

SolventReported Solubility
DMSO 88 mg/mL (164.81 mM)
Water Warmed: 4 mg/mL (7.49 mM)
Ethanol Insoluble

Preparing Stock Solutions

Stock preparation is unavailable for this product molecular weight.

Calculated stock concentrations do not establish solvent solubility. Refer to the reported solubility data for experimental guidance.

Storage

Store powder at -20°C, keep desiccated.
In powder form, the chemical is stable for 36 months.
In solution, store at -20°C and use within 1 month to prevent loss of potency. Aliquot to avoid multiple freeze/thaw cycles.

Research References

  1. [1] Mario Bigioni, Franco Zunino, Giovanni Capranico. Base mutation analysis of topoisomerase II-idarubicin-DNA ternary complex formation. Evidence for enzyme subunit cooperativity in DNA cleavage. Nucleic Acids Research (1994). PMID: 8036155 DOI: 10.1093/nar/22.12.2274 Source material
  2. [2] Mohieddin Barzegar, Mehdi Allahbakhshian Farsan, Vahid Amiri, et al. AML-derived Extracellular Vesicles Confer De Novo Chemoresistance to Leukemic Myeloblast Cells by Promoting Drug Export Genes Expression and ROS Inhibition Iranian Journal of Pharmaceutical Research (2021). PMID: 34400967 DOI: 10.22037/ijpr.2020.113272.14199 Source material
  3. [3] Sylwia Dragojew, Agnieszka Marczak, Janusz Maszewski, et al. The induction of apoptosis by daunorubicin and idarubicin in human trisomic and diabetic fibroblasts Cellular & Molecular Biology Letters (2008). PMID: 17965967 DOI: 10.2478/s11658-007-0045-7 Source material

Publications

1 publication citing this product

  1. Wei Y, .et al. , Mol Cell, 2017, Jun 1;66(5):581-596.e6 PMID: 28552615

Added to your cart

View Cart Checkout
Loading...