Fig. 1 · Structure

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Natamycin (Pimaricin)

Cat. No. A10628 CAS 7681-93-8
Natamycin (Pimaricin) is a naturally occurring antifungal agent produced during fermentation by the bacterium Streptomyces natalensis, commonly found in soil.It is used to treat fungal infections.

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Publications for Natamycin

1 publication citing this product

  1. Lin Du, .et al. , J Nat Prod, 2023, Aug 25;86(8):1980-1993 PMID: 37523665

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Biological Activity

Bioactivity / Mechanism

Natamycin inhibited arginine import in Saccharomyces cerevisiae. A delayed-addition experiment stopped further uptake without releasing previously accumulated arginine, supporting transport inhibition rather than substrate leakage under the tested conditions. [1]

Natamycin’s membrane effects depended on lipid composition. In model vesicles it increased the slow phase of dithionite-induced fluorescence quenching particularly in ergosterol-containing membranes, while a cholesterol/sphingomyelin mixture showed a decrease. The assay indicates altered packing or transbilayer accessibility; it does not establish classical ion-pore formation. [2]

Literature-reported observations and conditions; not Adooq-tested protocols or general treatment recommendations.

Target & Activity

Target Activity Value
Microbial Metabolite  
Macrolide  
Human Endogenous Metabolite  

In Vitro Studies

In POPC model membranes, natamycin slowed the motion of both ergosterol and cholesterol as assessed by deuterium NMR. This result cautions against treating every membrane interaction as exclusive to ergosterol. [2]

Arginine uptake inhibition with a substrate-retention control

Cell-based study · Saccharomyces cerevisiae cells; radiolabeled arginine uptake normalized to cell optical density [1]

Natamycin reduced arginine uptake across the tested concentration series. Addition after uptake had begun stopped further accumulation without a corresponding loss of previously accumulated arginine, supporting inhibition of import in this assay.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
14C-arginine uptake and retention after delayed drug additionqualitative assay response Concentration-dependent uptake inhibition; pre-accumulated arginine was retained after natamycin addition.[1]

Literature-Reported Treatment Conditions

Treatment concentration
0, 2, 5, 10, or 20 μM natamycin in Fig. 2A; 20 μM in Fig. 2B. The 30 μM arginine concentration is substrate, not drug potency.
Exposure duration
Fig. 2A: 5 min pretreatment, uptake followed through 10 min; Fig. 2B: natamycin added 8 min after substrate addition, follow-up through 20 min.
Method
Cellular radiotracer uptake; untreated and DMSO controls in Fig. 2A; untreated delayed-addition comparison in Fig. 2B.
Vehicle
DMSO control is identified in Fig. 2A; final vehicle percentage was not acquired.
Reported limits
SI Experimental Methods could not be retrieved. Exact yeast strain, supplier/lot, stock composition, final vehicle percentage and detailed assay buffer/temperature were not established from the acquired main-text scope; no values inferred.
Methods and source locations

Compound reported in the paper: Natamycin; Compound label in the paper: natamycin

Evidence applies to the reported natamycin material in this assay; it does not validate an Adooq lot, a salt conversion, or a clinical formulation.

Results, S. cerevisiae Can1p/arginine transport paragraph; Fig. 2A/B and caption; Experimental Methods, transport assays paragraph

14C-arginine uptake and retention after delayed drug addition: 30 μM tracer substrate; Fig. 2A pretreatment series and Fig. 2B delayed-addition control; means of three separately performed experiments with SD. — Results, S. cerevisiae Can1p/arginine transport paragraph; Fig. 2A/B and caption; Experimental Methods, transport assays paragraph

Sterol mobility in natamycin-containing model membranes

Biochemical assay · POPC membranes containing 20 mol% ergosterol-d1 or cholesterol-d1, with or without 10 mol% natamycin [2]

NMR spectra indicated slower sterol rotational motion in the presence of natamycin for both ergosterol and cholesterol. The comparable response under these conditions limits an interpretation of all membrane interactions as exclusive to ergosterol.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
2H NMR spectral changes reporting sterol motionqualitative assay response Spectral broadening and loss of the resolved quadrupolar splitting pattern for both sterols with natamycin.[2]

Literature-Reported Treatment Conditions

Treatment concentration
10 mol% natamycin; 20 mol% deuterated sterol incorporated in POPC membranes (Fig. 1).
Method
Static 2H NMR of sterol-labeled model membranes, with matched no-natamycin membranes.
Vehicle
Natamycin and lipids mixed in methanol/chloroform; solvent evaporated and samples hydrated for NMR (§2.3).
Reported limits
Fig. 1 and the examined main NMR methods do not specify a replicate count or a treatment-to-acquisition interval.
Methods and source locations

Compound reported in the paper: Natamycin; Compound label in the paper: natamycin

Evidence applies to the reported natamycin material in this assay; it does not validate an Adooq lot, a salt conversion, or a clinical formulation.

Materials and methods §§2.1 and 2.3; Results §3.1, first NMR paragraphs; Fig. 1A/B and caption

2H NMR spectral changes reporting sterol motion: Static 2H NMR at 25 °C; matched membranes lacking natamycin; qualitative spectral comparison, not an affinity determination. — Materials and methods §§2.1 and 2.3; Results §3.1, first NMR paragraphs; Fig. 1A/B and caption

Lipid-dependent access of dithionite to membrane-associated fluorophore

Biochemical assay · NBD-PC-containing large unilamellar vesicles: POPC; POPC/cholesterol or POPC/ergosterol (4:1); POPC/SSM/cholesterol or POPC/SSM/ergosterol (4:1:1) [2]

Natamycin accelerated the slow fluorescence-quenching component in ergosterol-containing vesicles. Cholesterol-containing controls showed smaller effects, and the cholesterol/SSM mixture showed a decrease. The assay supports changes in lipid packing/accessibility; faster dithionite entry and faster NBD-PC transbilayer movement are alternative interpretations.

Measured endpoints — not treatment concentrations
EndpointReported resultReference
Slow component of dithionite-induced NBD-PC fluorescence reductionqualitative assay response Increased slow-phase quenching in ergosterol membranes; little effect in pure POPC, smaller effect in POPC/cholesterol, and decreased quenching in POPC/SSM/cholesterol.[2]

Literature-Reported Treatment Conditions

Treatment concentration
3.3 μM natamycin, 33 μM lipid and 0.3 μM NBD-PC in the fluorescence measurement; lipid/natamycin molar ratio 10 (Fig. 5).
Exposure duration
Continuous traces; dithionite added 30 s after starting acquisition; Triton X-100 added after 300 s (§2.2).
Method
NBD-PC fluorescence measured at 37 °C; fitted slow quenching component compared across matched lipid compositions with and without embedded natamycin.
Vehicle
Natamycin dissolved in methanol and incorporated during vesicle preparation; final ethanol below 1% (v/v) (§2.2). Residual methanol concentration not specified in the examined method.
Reported limits
Fig. 5 caption says kP was normalized to no-natamycin values, while panel B labels kP in s−1 and shows paired conditions. Quantitative normalization/magnitude remains unclear; only direction is adopted.
Methods and source locations

Compound reported in the paper: Natamycin; Compound label in the paper: natamycin

Evidence applies to the reported natamycin material in this assay; it does not validate an Adooq lot, a salt conversion, or a clinical formulation.

Materials and methods §§2.1–2.2; Results §3.4; Fig. 5A/B and caption

Slow component of dithionite-induced NBD-PC fluorescence reduction: Bi-exponential fitting of fluorescence traces; matched vesicles without natamycin and detergent endpoint control. Caption reports mean ± SE from 1–2 independent samples, each measured in triplicate. No precise rates or fold changes adopted. — Materials and methods §§2.1–2.2; Results §3.4; Fig. 5A/B and caption

Specifications

Manufacturer Adooq Bioscience
CAS Number 7681-93-8
Formula C33H47NO13
Molecular Weight 665.7
Synonyms Natacyn; Pimaricin
SMILES
C[C@@H]1C/C=C/C=C/C=C/C=C/[C@H](O[C@@H]2O[C@H](C)[C@@H](O)[C@H](N)[C@@H]2O)C[C@@H]2O[C@](O)(C[C@@H](O)C[C@H]3O[C@@H]3/C=C/C(=O)O1)C[C@H](O)[C@H]2C(=O)O

Storage & Solubility

In Vitro Solubility

Reported Solubility

SolventReported Solubility
DMSO 7 mg/mL (10.51 mM)
Water Insoluble
Ethanol Insoluble

Preparing Stock Solutions

Stock preparation is unavailable for this product molecular weight.

Calculated stock concentrations do not establish solvent solubility. Refer to the reported solubility data for experimental guidance.

Storage

Store powder at -20°C, keep desiccated.
In powder form, the chemical is stable for 36 months.
In solution, store at -20°C and use within 1 month to prevent loss of potency. Aliquot to avoid multiple freeze/thaw cycles.

Research References

  1. [1] te Welscher YM, van Leeuwen MR, de Kruijff B, et al. Polyene antibiotic that inhibits membrane transport proteins Proceedings of the National Academy of Sciences of the United States of America (2012). PMID: 22733749 DOI: 10.1073/pnas.1203375109 Source material
  2. [2] Akkerman V, Scheidt HA, Reinholdt P, et al. Natamycin interferes with ergosterol-dependent lipid phases in model membranes BBA advances (2023). PMID: 37691996 DOI: 10.1016/j.bbadva.2023.100102 Source material

Publications

1 publication citing this product

  1. Lin Du, .et al. , J Nat Prod, 2023, Aug 25;86(8):1980-1993 PMID: 37523665

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