In rd1 retinal explants, 0.1 µM INO1001 reduced PARP activity, PAR accumulation, calpain activity and TUNEL-positive photoreceptor cells relative to untreated rd1 cultures. General HDAC activity increased. Combining INO1001 with 5 µM JA2131 further lowered TUNEL positivity, without a further reduction in calpain activity. These ex-vivo findings do not establish an in-vivo retinal benefit. [2]
Retinal responses depended on the tested context. In Rho I255del/+ retinal explants, 10 µM INO1001 decreased PARP activity but increased TUNEL-positive photoreceptor cells; calpain activity was unchanged. This result limits broad neuroprotection claims across retinal disease models and concentrations. [3]
Cellular PARP1/PARP2 engagement and cell-cycle profiling
Cell-based study · Live human U-2 OS osteosarcoma cells expressing PARP1 L713F-GFP and PARP2 L269A-mCherry CeTEAM biosensors [1]
INO-1001 preferentially stabilized the PARP1 biosensor over PARP2 (approximately 30-fold). A concurrent S/G2 cell-cycle shift was reported, with EC50 5.97e-008 M. These are cellular biosensor/phenotype endpoints, not purified-enzyme IC50 values or direct PARP–DNA retention measurements.
Literature-Reported Treatment Conditions
- Treatment concentration
- Concentration gradient; EC50 values are assay endpoints, not a selected treatment dose.
- Exposure duration
- 24 h (Figure 3).
- Method
- Live-cell fluorescence microscopy with concurrent Hoechst DNA-content measurement.
- Vehicle
- 0.1% DMSO final for INO-1001; DMSO comparator.
- Co-treatment
- None for this profiling experiment.
- Reported limits
- Exact INO-1001 gradient bounds not transcribed from curves; no lot or salt designation in the read chemicals section.
Methods and source locations
Compound reported in the paper: INO-1001; Compound label in the paper: INO-1001
Evidence applies to the named study material and model. Salt form and analytical equivalence to the current catalog lot are not established; no salt conversion or lot-performance claim.
Figure 3A–F; Tables 1–2; Experimental procedures: Antibodies and chemicals, Live-cell fluorescence microscopy; Results: validation and selectivity sections
Relative apparent cellular target engagement of PARP1 and PARP2 mutant biosensors: Fluorescence accumulation normalized to DMSO; Figure 3B–D reports means from n = 3 experiments. — Results: Intracellular selectivity profiling; Figure 3B–D; Table 1, INO-1001 row
S/G2 shift from median Hoechst intensity (DNA content): Concurrent live-cell DNA-content analysis; Figure 3F overlay uses one representative experiment from n = 3. — Table 2, INO-1001 row; Figure 3E–F and caption
PARP inhibition in rd1 retinal explant treatment matrix
Cell-based study · Organotypic rd1 mouse retinal explants; wild-type explants provide baseline comparisons; cellular/ex-vivo intervention [2]
At 0.1 µM, INO1001 reduced PARP-activity-positive, PAR-positive, calpain-activity-positive and TUNEL-positive outer nuclear layer cells relative to untreated rd1 cultures. HDAC activity increased. Adding 5 µM JA2131 further reduced TUNEL positivity but did not further reduce calpain activity.
Literature-Reported Treatment Conditions
- Treatment concentration
- INO1001 0.1 µM; combination arm also contains JA2131 5 µM.
- Exposure duration
- Retinae explanted at P5 and assessed at P11; medium changed with treatment every 2 days.
- Method
- Exposure in organotypic retinal explant medium.
- Vehicle
- Compounds dissolved in DMSO; final medium ≤0.1% DMSO. Reported comparator is untreated rd1, with untreated wild type as baseline.
- Co-treatment
- INO1001 monotherapy and INO1001 + JA2131 combination distinguished; JA2131-only and 8-Br-ADPR arms provide pathway comparisons.
- Reported limits
- A separate start time after explantation and a matched vehicle-only group are not explicitly specified in the read culture-method paragraph. No analytical lot validation.
Methods and source locations
Compound reported in the paper: INO-1001; Compound label in the paper: INO1001
Evidence applies to the named study material and model. Salt form and analytical equivalence to the current catalog lot are not established; no salt conversion or lot-performance claim.
Figures 2–4 and captions; embedded Additional Tables 2–3; Methods: Organotypic retinal explant culture, marker assays, Microscopy and image analysis; relevant Results/Discussion
PARP-activity-positive cells in outer nuclear layer: In situ fluorescent NAD+ incorporation assay; one-way ANOVA/Tukey comparisons. — Figure 2B–C; Additional Table 2, PARP activity rows
PAR-positive cells in outer nuclear layer: PAR immunostaining; one-way ANOVA/Tukey comparisons. — Figure 2D–E; Additional Table 2, PAR rows
Calpain-activity-positive cells in outer nuclear layer: In situ calpain activity assay; one-way ANOVA/Tukey comparisons; combination did not add to monotherapy effect. — Figure 3A–B; Additional Table 2, calpain activity rows; associated Results
TUNEL-positive cells in outer nuclear layer: TUNEL staining; one-way ANOVA/Tukey; counts are labeled samples n in the table, not inferred numbers of animals. — Figure 4C–D; Additional Table 3, TUNEL rows
HDAC-activity-positive cells in outer nuclear layer: General in situ HDAC assay; assay does not identify which HDAC/sirtuin isoform contributes. — Figure 4A–B; Additional Table 3, HDAC activity rows
Dose-dependent effects in a dominant rhodopsin-mutant retinal explant model
Cell-based study · Organotypic Rho I255del/+ mouse retinal explants; untreated mutant control and wild-type comparison [3]
At 10 µM, INO1001 reduced PARP-activity-positive cells but increased TUNEL-positive photoreceptor cells. Calpain activity did not change significantly. The 0.1 and 1 µM groups did not show the significant effects highlighted for 10 µM; the rd1 protective finding must not be generalized across retinal models.
Literature-Reported Treatment Conditions
- Treatment concentration
- 0.1, 1 and 10 µM INO1001.
- Exposure duration
- Explant culture P12–P20; drug treatment from P14 to P20, medium changed every second day.
- Method
- Exposure in organotypic retinal explant medium.
- Vehicle
- DMSO in culture medium; non-treated (NT) comparator. Separate DMSO control groups (0.01%, 0.1%, 1%) are described in Methods.
- Co-treatment
- INO1001 single agent; other PARP inhibitors tested in parallel, not combined.
- Reported limits
- Exact final DMSO concentration for each INO1001 dose not specified in the read treatment paragraph. Tables S7/S9 not retrieved as usable supplement; no exact group mean or per-group n inferred from dots.
Methods and source locations
Compound reported in the paper: INO-1001; Compound label in the paper: INO1001
Evidence applies to the named study material and model. Salt form and analytical equivalence to the current catalog lot are not established; no salt conversion or lot-performance claim.
Table 1; Methods 2.2 and 2.9; Results 3.5; Figure 5A–F and caption
Outer nuclear layer PARP-activity-positive cells: In situ activity assay; Figure 5 caption gives 3–14 independent retinal cultures across panels, SD error bars and two-way ANOVA/Dunnett comparisons. — Results 3.5; Figure 5A–B and caption
Outer nuclear layer photoreceptor cell death: TUNEL assay; no exact percentage estimated from plotted points. — Results 3.5; Figure 5E–F and caption
Outer nuclear layer calpain activity: In situ calpain assay; absence of significance is not proof of equivalence. — Results 3.5; Figure 5C–D and caption